2021-10-12 12:43:08 +00:00
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name: bamtools_split
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description: BamTools provides both a programmer's API and an end-user's toolkit for handling BAM files.
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keywords:
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- bamtools
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- bamtools/split
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- bam
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- split
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- chunk
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tools:
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- bamtools:
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description: C++ API & command-line toolkit for working with BAM data
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homepage: http://github.com/pezmaster31/bamtools
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documentation: https://github.com/pezmaster31/bamtools/wiki
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tool_dev_url: http://github.com/pezmaster31/bamtools
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doi: ""
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2022-02-15 11:15:27 +00:00
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licence: ["MIT"]
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2021-10-12 12:43:08 +00:00
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- bam:
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type: file
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2022-04-19 13:05:02 +00:00
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description: A list of BAM files to merge and then split
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2021-10-12 12:43:08 +00:00
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pattern: "*.bam"
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2022-04-19 13:05:02 +00:00
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- bam_list:
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type: file
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description: |
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Input file containing bam files to merge before splitting,
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one line per file
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2021-10-12 12:43:08 +00:00
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- bam:
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type: file
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description: Several Bam files
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pattern: "*.bam"
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authors:
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- "@sguizard"
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2022-04-19 13:05:02 +00:00
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- "@matthdsm"
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