2021-04-13 20:48:43 +00:00
|
|
|
name: deeptools_plotheatmap
|
|
|
|
|
description: plots values produced by deeptools_computematrix as a heatmap
|
|
|
|
|
keywords:
|
|
|
|
|
- plot
|
|
|
|
|
- heatmap
|
|
|
|
|
- scores
|
|
|
|
|
- matrix
|
|
|
|
|
tools:
|
|
|
|
|
- deeptools:
|
|
|
|
|
description: A set of user-friendly tools for normalization and visualization of deep-sequencing data
|
|
|
|
|
homepage:
|
|
|
|
|
documentation: https://deeptools.readthedocs.io/en/develop/index.html
|
|
|
|
|
tool_dev_url: https://github.com/deeptools/deepTools
|
|
|
|
|
doi: "10.1093/nar/gku365"
|
2022-02-15 11:15:27 +00:00
|
|
|
licence: ["GPL v3"]
|
2021-04-13 20:48:43 +00:00
|
|
|
|
|
|
|
|
input:
|
|
|
|
|
- meta:
|
|
|
|
|
type: map
|
|
|
|
|
description: |
|
|
|
|
|
Groovy Map containing sample information
|
|
|
|
|
e.g. [ id:'test' ]
|
|
|
|
|
- matrix:
|
|
|
|
|
type: file
|
|
|
|
|
description: |
|
|
|
|
|
gzipped matrix file produced by deeptools_
|
|
|
|
|
computematrix deeptools utility
|
|
|
|
|
pattern: "*.{mat.gz}"
|
|
|
|
|
|
|
|
|
|
output:
|
|
|
|
|
- meta:
|
|
|
|
|
type: map
|
|
|
|
|
description: |
|
|
|
|
|
Groovy Map containing sample information
|
|
|
|
|
e.g. [ id:'test', single_end:false ]
|
|
|
|
|
- pdf:
|
|
|
|
|
type: file
|
|
|
|
|
description: |
|
|
|
|
|
Output figure containing resulting plot
|
|
|
|
|
pattern: "*.{plotHeatmap.pdf}"
|
|
|
|
|
- matrix:
|
|
|
|
|
type: file
|
|
|
|
|
description: |
|
|
|
|
|
File containing the matrix of values
|
|
|
|
|
used to generate the heatmap
|
|
|
|
|
pattern: "*.{plotHeatmap.mat.tab}"
|
2021-10-03 07:20:26 +00:00
|
|
|
- versions:
|
2021-04-13 20:48:43 +00:00
|
|
|
type: file
|
2021-10-03 07:20:26 +00:00
|
|
|
description: File containing software versions
|
2021-09-27 08:41:24 +00:00
|
|
|
pattern: "versions.yml"
|
2021-04-13 20:48:43 +00:00
|
|
|
|
|
|
|
|
authors:
|
|
|
|
|
- "@emiller88"
|
|
|
|
|
- "@drpatelh"
|
|
|
|
|
- "@joseespinosa"
|
