nf-core_modules/modules/flash/meta.yml

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name: flash
description: Perform merging of mate paired-end sequencing reads
keywords:
- sort
- reads merging
- merge mate pairs
tools:
- flash:
description: |
Merge mates from fragments that are shorter than twice the read length
homepage: https://ccb.jhu.edu/software/FLASH/
documentation: {}
doi: 10.1093/bioinformatics/btr507
licence: ["GPL v3+"]
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- reads:
type: file
description: |
List of input FastQ files of size 2; i.e., paired-end data.
pattern: "*fastq.gz"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- reads:
type: file
description: The merged fastq reads
pattern: "*fastq.gz"
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
authors:
- "@Erkison"