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https://github.com/MillironX/nf-core_modules.git
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27 lines
1.2 KiB
YAML
27 lines
1.2 KiB
YAML
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- name: trimmomatic single-end
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command: nextflow run ./tests/modules/trimmomatic -entry test_trimmomatic_single_end -c ./tests/config/nextflow.config -c ./tests/modules/trimmomatic/nextflow.config
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tags:
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- "trimmomatic"
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files:
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- path: "output/trimmomatic/test.SE.paired.trim.fastq.gz"
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- path: "output/trimmomatic/test.log"
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md5sum: e4c3f619e9b0e26847f8f3e3d9af319b
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- name: trimmomatic paired-end
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command: nextflow run ./tests/modules/trimmomatic -entry test_trimmomatic_paired_end -c ./tests/config/nextflow.config -c ./tests/modules/trimmomatic/nextflow.config
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tags:
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- "trimmomatic"
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files:
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- path: "output/trimmomatic/test.log"
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md5sum: 9629761761a34576b3484bf4174f681f
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- path: "output/trimmomatic/test.paired.trim_1.fastq.gz"
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- path: "output/trimmomatic/test.unpaired.trim_1.fastq.gz"
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- path: "output/trimmomatic/test.paired.trim_2.fastq.gz"
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- path: "output/trimmomatic/test.unpaired.trim_2.fastq.gz"
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- name: trimmomatic no adapter specified
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command: nextflow run ./tests/modules/trimmomatic -entry test_trimmomatic_no_adaptor -c ./tests/config/nextflow.config -c ./tests/modules/trimmomatic/nextflow.config
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tags:
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- "trimmomatic"
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exit_code: 1
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