2020-06-01 12:52:43 +00:00
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FROM continuumio/miniconda3:4.8.2
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LABEL authors="chris.cheshire@crick.ac.uk" \
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2020-06-01 14:13:30 +00:00
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description="Docker image containing all requirements for the nf-core umi_tools module"
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2020-06-01 12:52:43 +00:00
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# Install apt packages
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RUN apt-get update \
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&& apt-get install -y --no-install-recommends \
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git=1:2.20.1-2+deb10u3 \
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apt-utils=1.8.2 \
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unzip=6.0-23+deb10u1 \
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procps=2:3.3.15-2 \
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build-essential=12.6 \
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zlib1g-dev=1:1.2.11.dfsg-1 \
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&& apt-get clean \
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&& rm -rf /var/lib/apt/lists/*
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# Install conda packages
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COPY environment.yml /
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RUN conda env create -f /environment.yml && conda clean -a
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2020-06-01 14:13:30 +00:00
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ENV PATH /opt/conda/envs/nfcore-umitools-0.1/bin:$PATH
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2020-06-01 12:52:43 +00:00
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# Reset work dir
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WORKDIR /home
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