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62 lines
1.9 KiB
YAML
62 lines
1.9 KiB
YAML
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name: blast_blastn
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description: Queries a BLAST DNA database
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keywords:
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- fasta
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- blast
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- blastn
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- DNA sequence
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tools:
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- blast:
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description: |
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BLAST finds regions of similarity between biological sequences.
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homepage: https://blast.ncbi.nlm.nih.gov/Blast.cgi
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documentation: https://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=Blastdocs
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doi: 10.1016/S0022-2836(05)80360-2
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params:
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- outdir:
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type: string
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description: |
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The pipeline's output directory. By default, the module will
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output files into `$params.outdir/<SOFTWARE>`
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- publish_dir_mode:
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type: string
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description: |
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Value for the Nextflow `publishDir` mode parameter.
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Available: symlink, rellink, link, copy, copyNoFollow, move.
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- enable_conda:
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type: boolean
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description: |
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Run the module with Conda using the software specified
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via the `conda` directive
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- singularity_pull_docker_container:
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type: boolean
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description: |
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Instead of directly downloading Singularity images for use with Singularity,
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force the workflow to pull and convert Docker containers instead.
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- fasta:
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type: file
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description: Input fasta file containing queries sequences
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pattern: "*.{fa,fasta}"
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- db:
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type: directory
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description: Directory containing blast database
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pattern: "*"
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output:
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- txt:
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type: file
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description: File containing blastn hits
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pattern: "*.{blastn.txt}"
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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authors:
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- "@joseespinosa"
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- "@drpatelh"
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