2021-02-01 12:13:21 +00:00
|
|
|
name: quast
|
2021-01-29 15:06:14 +00:00
|
|
|
description: Quality Assessment Tool for Genome Assemblies
|
|
|
|
|
keywords:
|
|
|
|
|
- quast
|
|
|
|
|
- assembly
|
|
|
|
|
- quality
|
|
|
|
|
tools:
|
2021-02-01 06:44:26 +00:00
|
|
|
- quast:
|
2021-01-29 15:06:14 +00:00
|
|
|
description: |
|
2021-02-01 06:44:26 +00:00
|
|
|
QUAST calculates quality metrics for genome assemblies
|
2021-01-29 15:06:14 +00:00
|
|
|
homepage: http://bioinf.spbau.ru/quast
|
|
|
|
|
doi:
|
|
|
|
|
input:
|
|
|
|
|
- consensus:
|
2021-02-01 06:44:26 +00:00
|
|
|
type: file
|
2021-01-29 15:06:14 +00:00
|
|
|
description: |
|
2021-02-01 06:44:26 +00:00
|
|
|
Fasta file containing the assembly of interest
|
2021-01-29 15:06:14 +00:00
|
|
|
- fasta:
|
|
|
|
|
type: file
|
|
|
|
|
description: |
|
2021-02-01 12:13:21 +00:00
|
|
|
The genome assembly to be evaluated. Has to contain at least a non-empty string dummy value.
|
|
|
|
|
- use_fasta:
|
|
|
|
|
type: boolean
|
2021-02-01 13:03:36 +00:00
|
|
|
description: Whether to use the provided fasta reference genome file
|
2021-01-29 15:06:14 +00:00
|
|
|
- gff:
|
|
|
|
|
type: file
|
2021-02-01 12:13:21 +00:00
|
|
|
description: The genome GFF file. Has to contain at least a non-empty string dummy value.
|
|
|
|
|
- use_gff:
|
|
|
|
|
type: boolean
|
2021-02-01 13:03:22 +00:00
|
|
|
description: Whether to use the provided gff reference annotation file
|
2021-01-29 15:06:14 +00:00
|
|
|
|
|
|
|
|
output:
|
2021-02-01 06:44:26 +00:00
|
|
|
- quast:
|
|
|
|
|
type: directory
|
|
|
|
|
description: Directory containing complete quast report
|
2021-01-29 15:06:14 +00:00
|
|
|
pattern: "{prefix}.lineage_report.csv"
|
2021-02-01 06:44:26 +00:00
|
|
|
- report:
|
2021-01-29 15:06:14 +00:00
|
|
|
|
|
|
|
|
- version:
|
|
|
|
|
type: file
|
|
|
|
|
description: File containing software version
|
|
|
|
|
pattern: "*.{version.txt}"
|
|
|
|
|
|
|
|
|
|
authors:
|
|
|
|
|
- "@drpatelh"
|
|
|
|
|
- "@kevinmenden"
|
