2020-11-25 00:16:56 +00:00
|
|
|
- name: Run bwa index
|
2021-02-02 13:38:34 +00:00
|
|
|
command: nextflow run ./tests/software/bwa -profile docker -entry test_bwa_index -c tests/config/nextflow.config
|
2020-11-25 00:16:56 +00:00
|
|
|
tags:
|
|
|
|
|
- bwa
|
|
|
|
|
- bwa_index
|
|
|
|
|
files:
|
2021-02-02 12:46:34 +00:00
|
|
|
- path: output/bwa/bwa/NC_010473.amb
|
2020-11-25 00:16:56 +00:00
|
|
|
md5sum: 942a990ae872f1c0b8d72dda2db405d5
|
2021-02-02 12:46:34 +00:00
|
|
|
- path: output/bwa/bwa/NC_010473.bwt
|
2020-11-25 00:16:56 +00:00
|
|
|
md5sum: 7301b52e2ecb893d429a49fa692447ae
|
2021-02-02 12:46:34 +00:00
|
|
|
- path: output/bwa/bwa/NC_010473.pac
|
2020-11-25 00:16:56 +00:00
|
|
|
md5sum: 4d5e6fc45bbc968f7f859e9ca2cc89ad
|
2021-02-02 12:46:34 +00:00
|
|
|
- path: output/bwa/bwa/NC_010473.sa
|
2020-11-25 00:16:56 +00:00
|
|
|
md5sum: a47dcc92e750e2f16fbd979b8ff9538e
|
|
|
|
|
|
|
|
|
|
- name: Run bwa mem single-end
|
2021-02-02 13:38:34 +00:00
|
|
|
command: nextflow run ./tests/software/bwa -profile docker -entry test_bwa_mem_single_end -c tests/config/nextflow.config
|
2020-11-25 00:16:56 +00:00
|
|
|
tags:
|
|
|
|
|
- bwa
|
|
|
|
|
- bwa_mem
|
|
|
|
|
files:
|
|
|
|
|
- path: output/test_single_end/test.bam
|
2021-02-02 13:37:40 +00:00
|
|
|
md5sum: 52e81e5bd523d0b27fe533b21a0d80f5
|
|
|
|
|
|
2020-11-25 00:16:56 +00:00
|
|
|
- name: Run bwa mem paired-end
|
2021-02-02 13:38:34 +00:00
|
|
|
command: nextflow run ./tests/software/bwa -profile docker -entry test_bwa_mem_paired_end -c tests/config/nextflow.config
|
2020-11-25 00:16:56 +00:00
|
|
|
tags:
|
|
|
|
|
- bwa
|
|
|
|
|
- bwa_mem
|
|
|
|
|
files:
|
|
|
|
|
- path: output/test_paired_end/test.bam
|
2021-02-02 13:37:40 +00:00
|
|
|
md5sum: 86d82fdb68ed384c656cfc62a253052f
|
