nf-core_modules/tests/software/rseqc/junctionannotation/main.nf

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#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { RSEQC_JUNCTIONANNOTATION } from '../../../../software/rseqc/junctionannotation/main.nf' addParams(options: [:])
workflow test_rseqc_junctionannotation {
input = [ [ id:'test', single_end: false ], // meta map
file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true)
]
bed = file(params.test_data['sarscov2']['genome']['test_bed12'], checkIfExists: true)
RSEQC_JUNCTIONANNOTATION ( input, bed )
}