2021-09-16 10:42:23 +00:00
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name: agrvate
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description: Rapid identification of Staphylococcus aureus agr locus type and agr operon variants
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keywords:
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- fasta
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- virulence
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- Staphylococcus aureus
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tools:
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- agrvate:
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description: Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.
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homepage: https://github.com/VishnuRaghuram94/AgrVATE
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documentation: https://github.com/VishnuRaghuram94/AgrVATE
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tool_dev_url: https://github.com/VishnuRaghuram94/AgrVATE
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doi: ""
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2022-02-15 11:15:27 +00:00
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licence: ["MIT"]
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2021-09-16 10:42:23 +00:00
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- fasta:
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type: file
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description: A Staphylococcus aureus fasta file.
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pattern: "*.fasta"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- summary:
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type: file
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description: A summary of the agrvate assessement
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pattern: "*-summary.tab"
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- results_dir:
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type: directory
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description: Results of the agrvate assessement
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pattern: "*-results"
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2021-10-03 07:20:26 +00:00
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- versions:
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2021-09-16 10:42:23 +00:00
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type: file
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2021-10-03 07:20:26 +00:00
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description: File containing software versions
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2021-09-27 08:41:24 +00:00
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pattern: "versions.yml"
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2021-09-16 10:42:23 +00:00
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authors:
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- "@abhi18av"
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