2022-05-16 12:42:34 +00:00
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name: biobambam_bammerge
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2022-05-16 12:39:58 +00:00
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description: Merge a list of sorted bam files
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keywords:
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- merge
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- bam
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tools:
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- biobambam:
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description: |
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biobambam is a set of tools for early stage alignment file processing.
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homepage: https://gitlab.com/german.tischler/biobambam2
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documentation: https://gitlab.com/german.tischler/biobambam2/-/blob/master/README.md
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doi: 10.1186/1751-0473-9-13
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licence: ["GPL v3"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- bam:
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type: file
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description: List containing 1 or more bam files
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- bam:
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type: file
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description: Merged BAM file
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pattern: "*.bam"
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- bam_index:
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type: file
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description: BAM index file
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2022-05-16 18:51:39 +00:00
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pattern: "*"
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- checksum:
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type: file
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description: Checksum file
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pattern: "*"
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2022-05-16 12:39:58 +00:00
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@matthdsm"
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