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20 lines
618 B
Text
20 lines
618 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { HOMER_ANNOTATEPEAKS } from '../../../../software/homer/annotatepeaks/main.nf' addParams( options: [:] )
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workflow test_homer_annotatepeaks {
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def fasta = file("${launchDir}/tests/data/genomics/sarscov2/fasta/test_genome.fasta", checkIfExists: true)
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def gtf = file("${launchDir}/tests/data/genomics/sarscov2/gtf/test_genome.gtf", checkIfExists: true)
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def input = []
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input = [ [ id:'test'],
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file("${launchDir}/tests/data/genomics/sarscov2/bed/test.bed", checkIfExists: true) ]
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HOMER_ANNOTATEPEAKS ( input, fasta, gtf)
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}
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