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19 lines
700 B
Text
19 lines
700 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { PICARD_COLLECTWGSMETRICS } from '../../../../software/picard/collectwgsmetrics/main.nf' addParams( options: [:] )
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workflow test_picard_collectwgsmetrics {
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def input = []
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input = [ [ id:'test', single_end:false ], // meta map
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file("${launchDir}/tests/data/genomics/sarscov2/bam/test_paired_end.sorted.bam", checkIfExists: true),
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file("${launchDir}/tests/data/genomics/sarscov2/bam/test_paired_end.sorted.bam.bai", checkIfExists: true),]
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PICARD_COLLECTWGSMETRICS (
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input,
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file("${launchDir}/tests/data/genomics/sarscov2/fasta/test_genome.fasta", checkIfExists: true)
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)
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}
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