nf-core_modules/modules/stranger/meta.yml

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name: stranger
description: Annotates output files from ExpansionHunter with the pathologic implications of the repeat sizes.
keywords:
- STR
- repeat_expansions
- annotate
- vcf
tools:
- stranger:
description: Annotate VCF files with str variants
homepage: https://github.com/moonso/stranger
documentation: https://github.com/moonso/stranger
tool_dev_url: https://github.com/moonso/stranger
doi: "10.5281/zenodo.4548873"
licence: ["MIT"]
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- vcf:
type: file
description: VCF with repeat expansions
pattern: "*.{vcf.gz,vcf}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- vcf:
type: file
description: annotated VCF with keys STR_STATUS, NormalMax and PathologicMin
pattern: "*.{vcf.gz}"
authors:
- "@ljmesi"