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20 lines
537 B
Text
20 lines
537 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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params.publish_dir_mode = 'link'
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params.enable_conda = false
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params.run_id = "test-run"
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include { IVAR_TRIM } from '../../../../software/ivar/trim/main.nf' addParams([:])
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workflow test_ivar_trim {
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bed_file = file("${launchDir}/tests/data/bed/test-sc2-artic-v3.bed", checkIfExists: true)
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def input = []
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input = [ [ id:'test'],
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file("${launchDir}/tests/data/bam/test-sc2-artic-v3.bam", checkIfExists: true) ]
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main:
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IVAR_TRIM ( input, bed_file )
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}
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