nf-core_modules/tests/software/cutadapt/main.nf

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2021-01-29 08:33:45 +00:00
#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { CUTADAPT } from '../../../software/cutadapt/main.nf' addParams( options: [ args:'-q 25' ] )
/*
* Test with single-end data
*/
workflow test_cutadapt_se {
def input = []
input = [ [ id:'test', single_end:true ], // meta map
[ file("${launchDir}/tests/data/fastq/rna/test_single_end.fastq.gz", checkIfExists: true) ] ]
CUTADAPT( input )
}
/*
* Test with paired-end data
*/
workflow test_cutadapt_pe {
def input = []
input = [ [ id:'test', single_end:false ], // meta map
[ file("${launchDir}/tests/data/fastq/rna/test_R1.fastq.gz", checkIfExists: true),
file("${launchDir}/tests/data/fastq/rna/test_R2.fastq.gz", checkIfExists: true) ] ]
CUTADAPT( input )
}