nf-core_modules/software/tcoffee/main.nf

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process tcoffee {
tag {fasta}
publishDir "${params.outdir}/tcoffee"
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container 'quay.io/biocontainers/t_coffee:11.0.8--py27pl5.22.0_5'
input:
path(fasta)
output:
path("${fasta}.aln")
script:
"""
t_coffee -seq $fasta -outfile ${fasta}.aln
"""
}