2021-02-12 18:08:57 -05:00
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name: bcftools_merge
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description: Merge VCF files
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keywords:
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- variant calling
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- merge
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- VCF
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tools:
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2021-02-24 03:47:36 -05:00
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- merge:
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2021-02-12 18:08:57 -05:00
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description: |
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Merge VCF files.
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homepage: http://samtools.github.io/bcftools/bcftools.html
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documentation: http://www.htslib.org/doc/bcftools.html
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doi: 10.1093/bioinformatics/btp352
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- vcfs:
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type: files
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description: |
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List containing 2 or more vcf files
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e.g. [ 'file1.vcf', 'file2.vcf' ]
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- tbis:
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type: files
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description: |
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List containing the tbi index files corresponding to the vcfs input files
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e.g. [ 'file1.vcf.tbi', 'file2.vcf.tbi' ]
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- vcf:
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type: file
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description: VCF merged output file
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pattern: "*.{vcf.gz}"
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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authors:
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- "@joseespinosa"
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- "@drpatelh"
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