mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-26 15:38:17 -05:00
42 lines
1.1 KiB
YAML
42 lines
1.1 KiB
YAML
|
name: last_lastdb
|
||
|
|
description: Prepare sequences for subsequent alignment with lastal.
|
||
|
|
keywords:
|
||
|
|
- LAST
|
||
|
|
- index
|
||
|
|
- fasta
|
||
|
|
- fastq
|
||
|
|
tools:
|
||
|
|
- last:
|
||
|
|
description: LAST finds & aligns related regions of sequences.
|
||
|
|
homepage: https://gitlab.com/mcfrith/last
|
||
|
|
documentation: https://gitlab.com/mcfrith/last/-/blob/main/doc/lastdb.rst
|
||
|
|
tool_dev_url: https://gitlab.com/mcfrith/last
|
||
|
|
doi: ""
|
||
|
|
licence: ['GPL-3.0-or-later']
|
||
|
|
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- fastx:
|
||
|
|
type: file
|
||
|
|
description: >
|
||
|
|
Sequence file in FASTA or FASTQ format.
|
||
|
|
May be compressed with gzip.
|
||
|
|
pattern: "*.{fasta,fasta.gz,fastq,fastq.gz}"
|
||
|
|
|
||
|
|
output:
|
||
|
|
- version:
|
||
|
|
type: file
|
||
|
|
description: File containing software version
|
||
|
|
pattern: "*.{version.txt}"
|
||
|
|
- index:
|
||
|
|
type: directory
|
||
|
|
description: directory containing the files of the LAST index
|
||
|
|
pattern: "lastdb/"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@charles-plessy"
|