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45 lines
1.2 KiB
YAML
45 lines
1.2 KiB
YAML
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name: tabix_bgziptabix
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description: bgzip a sorted tab-delimited genome file and then create tabix index
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keywords:
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- bgzip
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- compress
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- index
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- tabix
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- vcf
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tools:
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- tabix:
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description: Generic indexer for TAB-delimited genome position files.
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homepage: https://www.htslib.org/doc/tabix.html
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documentation: https://www.htslib.org/doc/tabix.1.html
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doi: 10.1093/bioinformatics/btq671
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- tab:
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type: file
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description: TAB-delimited genome position file
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pattern: "*.{bed,gff,sam,vcf}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- gz:
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type: file
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description: Output compressed file
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pattern: "*.{gz}"
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- tbi:
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type: file
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description: tabix index file
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pattern: "*.{gz.tbi}"
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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authors:
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- "@maxulysse"
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