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nf-core_modules/tests/modules/bwameth/align/test.yml

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add bwameth/align module + tests
2021-02-17 12:23:11 -05:00
- name: Run bwameth single-end test workflow
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
2021-07-07 05:10:18 -04:00
command: nextflow run ./tests/modules/bwameth/align -entry test_bwameth_align_single_end -c tests/config/nextflow.config
add bwameth/align module + tests
2021-02-17 12:23:11 -05:00
tags:
- bwameth
Lint modules ci (#389) * ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-04-08 04:10:52 -04:00
- bwameth/align
add bwameth/align module + tests
2021-02-17 12:23:11 -05:00
files:
- path: output/test_single_end/test.bam
- name: Run bwameth paired-end test workflow
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
2021-07-07 05:10:18 -04:00
command: nextflow run ./tests/modules/bwameth/align -entry test_bwameth_align_paired_end -c tests/config/nextflow.config
add bwameth/align module + tests
2021-02-17 12:23:11 -05:00
tags:
- bwameth
Lint modules ci (#389) * ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-04-08 04:10:52 -04:00
- bwameth/align
add bwameth/align module + tests
2021-02-17 12:23:11 -05:00
files:
- path: output/test_paired_end/test.bam
Remove def from module options definition in main (#270) * Remove def from module options definition in main * Fix bismark_deduplicate tests * Fix bwameth_align tests * Fixing gatk4 conda tests ("=" instead of ':' in build id) * Same as previous commit (Fix gatk4 test) * Fix qualimap bamqc test (no md5 check for pngs) * Fix seqkit split2 tests. Changed to new test data * Fix samtools tests. Some were missing initOptions include * Removing TOOL SUBTOOL template module since now it is included on tools repo
2021-03-15 08:16:43 -04:00
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