nf-core_modules/tests/modules/cutadapt/test.yml

- name: cutadapt single-end
  command: nextflow run ./tests/modules/cutadapt -entry test_cutadapt_single_end -c tests/config/nextflow.config
  tags:
    - cutadapt
  files:
    - path: ./output/cutadapt/test.cutadapt.log
    - path: ./output/cutadapt/test.trim.fastq.gz

- name: cutadapt paired-end
  command: nextflow run ./tests/modules/cutadapt -entry test_cutadapt_paired_end -c tests/config/nextflow.config
  tags:
    - cutadapt
  files:
    - path: ./output/cutadapt/test.cutadapt.log
    - path: ./output/cutadapt/test_1.trim.fastq.gz
    - path: ./output/cutadapt/test_2.trim.fastq.gz
Restructure tests to run individually for each module 2021-02-03 11:02:58 -05:00			`- name: cutadapt single-end`
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml 2021-07-07 05:10:18 -04:00			`command: nextflow run ./tests/modules/cutadapt -entry test_cutadapt_single_end -c tests/config/nextflow.config`
added cutadapt module and tests 2021-01-29 03:33:45 -05:00			`tags:`
			`- cutadapt`
			`files:`
			`- path: ./output/cutadapt/test.cutadapt.log`
			`- path: ./output/cutadapt/test.trim.fastq.gz`

Restructure tests to run individually for each module 2021-02-03 11:02:58 -05:00			`- name: cutadapt paired-end`
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml 2021-07-07 05:10:18 -04:00			`command: nextflow run ./tests/modules/cutadapt -entry test_cutadapt_paired_end -c tests/config/nextflow.config`
added cutadapt module and tests 2021-01-29 03:33:45 -05:00			`tags:`
			`- cutadapt`
			`files:`
			`- path: ./output/cutadapt/test.cutadapt.log`
			`- path: ./output/cutadapt/test_1.trim.fastq.gz`
			`- path: ./output/cutadapt/test_2.trim.fastq.gz`