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nf-core_modules/tests/modules/preseq/lcextrap/test.yml

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Restructure tests to run individually for each module
2021-02-03 11:02:58 -05:00
- name: preseq lcextrap single-end
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
2021-07-07 05:10:18 -04:00
command: nextflow run ./tests/modules/preseq/lcextrap -entry test_preseq_single_end -c tests/config/nextflow.config
Restructure tests to run individually for each module
2021-02-03 11:02:58 -05:00
tags:
- preseq
Lint modules ci (#389) * ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-04-08 04:10:52 -04:00
- preseq/lcextrap
Restructure tests to run individually for each module
2021-02-03 11:02:58 -05:00
files:
Fix preseq tests
2021-02-03 12:28:44 -05:00
- path: output/preseq/test.ccurve.txt
Update modules required for rnaseq pipeline (#449) * Update HISAT2 build module * Bump preseq version * Fix tests * Add meta.yml for preseq to fix linting * Auto-detect --genomeSAindexNbases for smaller genomes * Add placeholder to use human data for the tests * Add CSI output option to samtools/index * Fix samtools/index tests
2021-04-16 03:56:47 -04:00
md5sum: 1fa5cdd601079329618f61660bee00de
Fix preseq tests
2021-02-03 12:28:44 -05:00
- path: output/preseq/test.command.log
Restructure tests to run individually for each module
2021-02-03 11:02:58 -05:00
- name: preseq lcextrap paired-end
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
2021-07-07 05:10:18 -04:00
command: nextflow run ./tests/modules/preseq/lcextrap -entry test_preseq_paired_end -c tests/config/nextflow.config
Restructure tests to run individually for each module
2021-02-03 11:02:58 -05:00
tags:
- preseq
Lint modules ci (#389) * ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-04-08 04:10:52 -04:00
- preseq/lcextrap
Restructure tests to run individually for each module
2021-02-03 11:02:58 -05:00
files:
Fix preseq tests
2021-02-03 12:28:44 -05:00
- path: output/preseq/test.ccurve.txt
Update modules required for rnaseq pipeline (#449) * Update HISAT2 build module * Bump preseq version * Fix tests * Add meta.yml for preseq to fix linting * Auto-detect --genomeSAindexNbases for smaller genomes * Add placeholder to use human data for the tests * Add CSI output option to samtools/index * Fix samtools/index tests
2021-04-16 03:56:47 -04:00
md5sum: 10e5ea860e87fb6f5dc10f4f20c62040
Fix preseq tests
2021-02-03 12:28:44 -05:00
- path: output/preseq/test.command.log
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