mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-22 19:18:17 +00:00
43 lines
985 B
YAML
43 lines
985 B
YAML
|
name: "khmer_uniquekmers"
|
||
|
|
description:
|
||
|
|
keywords:
|
||
|
|
- khmer
|
||
|
|
- k-mer
|
||
|
|
- effective genome size
|
||
|
|
|
||
|
|
tools:
|
||
|
|
- "khmer":
|
||
|
|
description: khmer k-mer counting library
|
||
|
|
homepage: https://github.com/dib-lab/khmer
|
||
|
|
documentation: https://khmer.readthedocs.io/en/latest/
|
||
|
|
tool_dev_url: https://github.com/dib-lab/khmer
|
||
|
|
doi: "10.12688/f1000research.6924.1"
|
||
|
|
licence: ["BSD License"]
|
||
|
|
|
||
|
|
input:
|
||
|
|
- fasta:
|
||
|
|
type: file
|
||
|
|
description: fasta file
|
||
|
|
pattern: "*.{fa,fasta}"
|
||
|
|
- kmer_size:
|
||
|
|
type: value
|
||
|
|
description: k-mer size to use
|
||
|
|
pattern: "[0-9]+"
|
||
|
|
|
||
|
|
output:
|
||
|
|
- report:
|
||
|
|
type: file
|
||
|
|
description: Text file containing unique-kmers.py execution report
|
||
|
|
pattern: "report.txt"
|
||
|
|
- kmers:
|
||
|
|
type: file
|
||
|
|
description: Text file containing number of kmers
|
||
|
|
pattern: "kmers.txt"
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@JoseEspinosa"
|