nf-core_modules/modules/plink2/score/meta.yml

57 lines
1.5 KiB
YAML
Raw Normal View History

name: plink2_score
description: Apply a scoring system to each sample in a plink 2 fileset
keywords:
- plink2
- score
tools:
- plink2:
description: |
Whole genome association analysis toolset, designed to perform a range
of basic, large-scale analyses in a computationally efficient manner
homepage: http://www.cog-genomics.org/plink/2.0/
documentation: http://www.cog-genomics.org/plink/2.0/general_usage
tool_dev_url: None
doi: "10.1186/s13742-015-0047-8"
licence: ['GPL v3']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- pgen:
type: file
description: PLINK 2 binary genotype table
pattern: "*.{pgen}"
- psam:
type: file
description: PLINK 2 sample information file
pattern: "*.{psam}"
- pvar:
type: file
description: PLINK 2 variant information file
pattern: "*.{pvar}"
- scorefile:
type: file
description: A text file containing variant identifiers and weights
pattern: "*.{scores,txt,scorefile}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- score:
type: file
description: A text file containing sample scores, in plink 2 .sscore format
pattern: "*.{sscore}"
authors:
- "@nebfield"