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11 lines
538 B
Text
11 lines
538 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { SALMON_INDEX } from '../../../software/salmon/index/main.nf' addParams( options: [args: '--minAssignedFrags 1'] )
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workflow test_salmon_index {
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def genome_fasta = file("${launchDir}/tests/data/fasta/sarscov2/GCA_011545545.1_ASM1154554v1_genomic.fna", checkIfExists: true)
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def transcript_fasta = file("${launchDir}/tests/data/fasta/sarscov2/GCA_011545545.1_ASM1154554v1_cds_from_genomic.fna", checkIfExists: true)
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SALMON_INDEX ( genome_fasta, transcript_fasta )
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}
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