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16 lines
524 B
Text
16 lines
524 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { SAMTOOLS_MPILEUP } from '../../../software/samtools/mpileup/main.nf' addParams( options: [:] )
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workflow test_samtools_mpileup {
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def input = []
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def fasta = []
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input = [ [ id:'test', single_end:false ], // meta map
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file("${launchDir}/tests/data/bam/test.paired_end.sorted.bam", checkIfExists: true) ]
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fasta = [ file("${launchDir}/tests/data/fasta/E_coli/NC_010473.fa", checkIfExists: true) ]
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SAMTOOLS_MPILEUP ( input, fasta )
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}
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