nf-core_modules/modules/dragonflye/meta.yml

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name: dragonflye
description: Assemble bacterial isolate genomes from Nanopore reads
keywords:
- bacterial
- assembly
- nanopore
tools:
- dragonflye:
description: Microbial assembly pipeline for Nanopore reads
homepage: https://github.com/rpetit3/dragonflye
documentation: https://github.com/rpetit3/dragonflye/blob/main/README.md
licence: ["GPL v2"]
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- reads:
type: file
description: Input Nanopore FASTQ file
pattern: "*.fastq.gz"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- contigs:
type: file
description: The final assembly produced by Dragonflye
pattern: "contigs.fa"
- log:
type: file
description: Full log file for bug reporting
pattern: "dragonflye.log"
- raw_contigs:
type: file
description: Raw assembly produced by the assembler (Flye, Miniasm, or Raven)
pattern: "{flye,miniasm,raven}.fasta"
- txt:
type: file
description: Assembly information output by Flye
pattern: "flye-info.txt"
- gfa:
type: file
description: Assembly graph produced by Miniasm, or Raven
pattern: "{miniasm,raven}-unpolished.gfa"
authors:
- "@rpetit3"