nf-core_modules/modules/picard/fixmateinformation/meta.yml

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name: picard_fixmateinformation
description: Verify mate-pair information between mates and fix if needed
keywords:
- mate-pair
tools:
- picard:
description: |
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS)
data and formats such as SAM/BAM/CRAM and VCF.
homepage: https://broadinstitute.github.io/picard/
documentation: https://gatk.broadinstitute.org/hc/en-us/articles/360036713471-FixMateInformation-Picard-
tool_dev_url: https://github.com/broadinstitute/picard
licence: ["MIT"]
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- bam:
type: file
description: BAM file
pattern: "*.{bam}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- bam:
type: file
description: mate-pair verified BAM file
pattern: "*.{bam}"
authors:
- "@sateeshperi"
- "@mjcipriano"
- "@hseabolt"