mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
49 lines
1.2 KiB
YAML
49 lines
1.2 KiB
YAML
|
name: biscuit_vcf2bed
|
||
|
|
description: |
|
||
|
|
Summarizes methylation or SNV information from a Biscuit VCF in a
|
||
|
|
standard-compliant BED file.
|
||
|
|
keywords:
|
||
|
|
- biscuit
|
||
|
|
- DNA methylation
|
||
|
|
- WGBS
|
||
|
|
- scWGBS
|
||
|
|
- bisulfite sequencing
|
||
|
|
- aligner
|
||
|
|
- vcf
|
||
|
|
tools:
|
||
|
|
- biscuit:
|
||
|
|
description: A utility for analyzing sodium bisulfite conversion-based DNA methylation/modification data
|
||
|
|
homepage: https://huishenlab.github.io/biscuit/
|
||
|
|
documentation: https://huishenlab.github.io/biscuit/docs/methylextraction.html
|
||
|
|
tool_dev_url: https://github.com/huishenlab/biscuit
|
||
|
|
doi: ""
|
||
|
|
licence: ["MIT"]
|
||
|
|
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- vcf:
|
||
|
|
type: file
|
||
|
|
description: Biscuit vcf file (output of biscuit pileup)
|
||
|
|
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- bed:
|
||
|
|
type: file
|
||
|
|
description: Gzipped BED file with methylation or SNV information
|
||
|
|
pattern: "*.{bed.gz}"
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@njspix"
|