2021-03-16 11:37:06 +00:00
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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2021-03-16 11:54:42 +00:00
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include { HIFIASM } from '../../../software/hifiasm/main.nf' addParams( options: [:] )
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2021-03-16 11:37:06 +00:00
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2021-03-16 11:54:42 +00:00
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/*
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2021-03-16 11:37:06 +00:00
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* Test with single-end data
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*/
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2021-03-16 11:54:42 +00:00
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/* workflow test_fastqc_single_end {
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2021-03-16 11:37:06 +00:00
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def input = []
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input = [ [ id:'test', single_end:true ], // meta map
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[ file("${launchDir}/tests/data/genomics/sarscov2/fastq/test_1.fastq.gz", checkIfExists: true) ] ]
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FASTQC ( input )
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2021-03-16 11:54:42 +00:00
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} */
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2021-03-16 11:37:06 +00:00
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/*
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2021-03-16 11:54:42 +00:00
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* Test version printing
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2021-03-16 11:37:06 +00:00
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*/
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2021-03-16 11:54:42 +00:00
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workflow test_hifiasm_version {
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2021-03-16 11:37:06 +00:00
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2021-03-16 11:54:42 +00:00
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/* def input = []
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2021-03-16 11:37:06 +00:00
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input = [[id: 'test', single_end: false], // meta map
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[file("${launchDir}/tests/data/genomics/sarscov2/fastq/test_1.fastq.gz", checkIfExists: true),
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2021-03-16 11:54:42 +00:00
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file("${launchDir}/tests/data/genomics/sarscov2/fastq/test_2.fastq.gz", checkIfExists: true)]] */
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HIFIASM ()
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2021-03-16 11:37:06 +00:00
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}
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