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15 lines
474 B
Text
15 lines
474 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { LOFREQ_CALL } from '../../../../software/lofreq/call/main.nf' addParams( options: [:] )
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workflow test_lofreq_call {
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input = [ [ id:'test', single_end:false ], // meta map
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file(params.test_data['sarscov2']['illumina']['test_paired_end_bam'], checkIfExists: true) ]
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fasta = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
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LOFREQ_CALL ( input, fasta )
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}
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