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16 lines
546 B
Text
16 lines
546 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { SCOARY } from '../../../modules/scoary/main.nf' addParams( options: [:] )
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workflow test_scoary {
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input = [ [ id:'test', single_end:false ], // meta map
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file("https://github.com/AdmiralenOla/Scoary/raw/master/scoary/exampledata/Gene_presence_absence.csv", checkIfExists: true),
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file("https://github.com/AdmiralenOla/Scoary/raw/master/scoary/exampledata/Tetracycline_resistance.csv", checkIfExists: true) ]
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tree = []
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SCOARY ( input, tree)
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}
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