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47 lines
1.2 KiB
YAML
47 lines
1.2 KiB
YAML
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name: "mcroni"
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description: Analysis of mcr-1 gene (mobilized colistin resistance) for sequence variation
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keywords:
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- resistance
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- fasta
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tools:
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- "mcroni":
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description: "Scripts for finding and processing promoter variants upstream of mcr-1"
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homepage: "https://github.com/liampshaw/mcroni"
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documentation: "https://github.com/liampshaw/mcroni"
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tool_dev_url: "https://github.com/liampshaw/mcroni"
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doi: ""
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licence: "['MIT']"
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- fasta:
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type: file
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description: A fasta file.
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pattern: "*.{fasta.gz,fasta,fa.gz,fa,fna.gz,fna}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- tsv:
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type: file
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description: mcroni results in TSV format
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pattern: "*.tsv"
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- fa:
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type: file
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description: mcr-1 matching sequences
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pattern: "*.fa"
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authors:
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- "@rpetit3"
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