nf-core_modules/modules/gatk4/samtofastq/meta.yml

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name: gatk4_samtofastq
description: Converts BAM/SAM file to FastQ format
keywords:
- bed
- interval list
tools:
- gatk4:
description: |
Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools
with a primary focus on variant discovery and genotyping. Its powerful processing engine
and high-performance computing features make it capable of taking on projects of any size.
homepage: https://gatk.broadinstitute.org/hc/en-us
documentation: https://gatk.broadinstitute.org/hc/en-us/categories/360002369672s
doi: 10.1158/1538-7445.AM2017-3590
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test']
- bam:
type: file
description: Input SAM/BAM file
pattern: "*.{bam,sam}"
output:
- fastq:
type: file
description: converted fastq file
pattern: "*.fastq"
- versions:
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type: file
description: File containing software versions
pattern: "versions.yml"
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authors:
- "@kevinmenden"