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25 lines
1.1 KiB
Text
25 lines
1.1 KiB
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { FASTQC } from '../../../../modules/fastqc/main.nf' addParams( options: [:] )
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include { MULTIQC } from '../../../../modules/multiqc/main.nf' addParams( options: [:] )
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include { CUSTOM_DUMPSOFTWAREVERSIONS } from '../../../../modules/custom/dumpsoftwareversions/main.nf' addParams( options: [publish_dir:'custom'] )
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workflow test_custom_dumpsoftwareversions {
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input = [
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[ id: 'test', single_end: false ],
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[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true),
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file(params.test_data['sarscov2']['illumina']['test_2_fastq_gz'], checkIfExists: true) ]
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]
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FASTQC ( input )
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MULTIQC ( FASTQC.out.zip.collect { it[1] } )
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ch_software_versions = Channel.empty()
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ch_software_versions = ch_software_versions.mix(FASTQC.out.version)
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ch_software_versions = ch_software_versions.mix(MULTIQC.out.version)
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CUSTOM_DUMPSOFTWAREVERSIONS ( ch_software_versions.collectFile() )
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}
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