mirror of
https://github.com/MillironX/nf-core_modules.git
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28 lines
966 B
YAML
28 lines
966 B
YAML
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- name: gatk4 mutect2 test_gatk4_mutect2_tumor_normal_pair
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command: nextflow run tests/modules/gatk4/mutect2 -entry test_gatk4_mutect2_tumor_normal_pair -c tests/config/nextflow.config
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tags:
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- gatk4
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- gatk4/mutect2
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files:
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- path: output/gatk4/test.f1r2.tar.gz
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- path: output/gatk4/test.vcf.gz
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- path: output/gatk4/test.vcf.gz.tbi
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- name: gatk4 mutect2 test_gatk4_mutect2_tumor_single
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command: nextflow run tests/modules/gatk4/mutect2 -entry test_gatk4_mutect2_tumor_single -c tests/config/nextflow.config
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tags:
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- gatk4
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- gatk4/mutect2
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files:
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- path: output/gatk4/test.vcf.gz
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- path: output/gatk4/test.vcf.gz.tbi
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- name: gatk4 mutect2 test_gatk4_mutect2_generate_pon
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command: nextflow run tests/modules/gatk4/mutect2 -entry test_gatk4_mutect2_generate_pon -c tests/config/nextflow.config
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tags:
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- gatk4
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- gatk4/mutect2
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files:
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- path: output/gatk4/test.vcf.gz
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- path: output/gatk4/test.vcf.gz.tbi
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