nf-core_modules/tests/modules/bcftools/concat/test.yml

- name: bcftools concat test_bcftools_concat_tbi
  command: nextflow run ./tests/modules/bcftools/concat -entry test_bcftools_concat_tbi -c ./tests/config/nextflow.config  -c ./tests/modules/bcftools/concat/nextflow.config
  tags:
    - bcftools
    - bcftools/concat
  files:
    - path: output/bcftools/test3.vcf.gz
      md5sum: 35c88bfaad20101062e98beb217d7137

- name: bcftools concat test_bcftools_concat_no_tbi
  command: nextflow run ./tests/modules/bcftools/concat -entry test_bcftools_concat_no_tbi -c ./tests/config/nextflow.config  -c ./tests/modules/bcftools/concat/nextflow.config
  tags:
    - bcftools
    - bcftools/concat
  files:
    - path: output/bcftools/test3.vcf.gz
      md5sum: 35c88bfaad20101062e98beb217d7137
Added optional input of index files to bcftools/concat 2022-05-31 13:15:58 +00:00			`- name: bcftools concat test_bcftools_concat_tbi`
			`command: nextflow run ./tests/modules/bcftools/concat -entry test_bcftools_concat_tbi -c ./tests/config/nextflow.config -c ./tests/modules/bcftools/concat/nextflow.config`
Add bcftools/concat module. (#641) * draft for bcftools modules [ci skip] * initial test for bcftools concat * Update the params for testing * fix tests * Accomodate code review [ci skip] Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update the meta file and open PR for review * Update the keyword * Update the tags for module [ci skip[ * add threads Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> 2021-08-10 13:10:27 +00:00			`tags:`
Added optional input of index files to bcftools/concat 2022-05-31 13:15:58 +00:00			`- bcftools`
Add bcftools/concat module. (#641) * draft for bcftools modules [ci skip] * initial test for bcftools concat * Update the params for testing * fix tests * Accomodate code review [ci skip] Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update the meta file and open PR for review * Update the keyword * Update the tags for module [ci skip[ * add threads Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> 2021-08-10 13:10:27 +00:00			`- bcftools/concat`
Added optional input of index files to bcftools/concat 2022-05-31 13:15:58 +00:00			`files:`
			`- path: output/bcftools/test3.vcf.gz`
			`md5sum: 35c88bfaad20101062e98beb217d7137`

			`- name: bcftools concat test_bcftools_concat_no_tbi`
			`command: nextflow run ./tests/modules/bcftools/concat -entry test_bcftools_concat_no_tbi -c ./tests/config/nextflow.config -c ./tests/modules/bcftools/concat/nextflow.config`
			`tags:`
Add bcftools/concat module. (#641) * draft for bcftools modules [ci skip] * initial test for bcftools concat * Update the params for testing * fix tests * Accomodate code review [ci skip] Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update the meta file and open PR for review * Update the keyword * Update the tags for module [ci skip[ * add threads Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> 2021-08-10 13:10:27 +00:00			`- bcftools`
Added optional input of index files to bcftools/concat 2022-05-31 13:15:58 +00:00			`- bcftools/concat`
Add bcftools/concat module. (#641) * draft for bcftools modules [ci skip] * initial test for bcftools concat * Update the params for testing * fix tests * Accomodate code review [ci skip] Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update the meta file and open PR for review * Update the keyword * Update the tags for module [ci skip[ * add threads Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> 2021-08-10 13:10:27 +00:00			`files:`
			`- path: output/bcftools/test3.vcf.gz`
Bump software versions for viralrecon modules (#1198) * Bump software versions for viralrecon modules * Remove custom params.save_unaligned from bowtie2_align * Unify samtools modules and error if input and output names are the same * Fix ALL the tests 2022-01-07 17:52:39 +00:00			`md5sum: 35c88bfaad20101062e98beb217d7137`