nf-core_modules/tests/modules/gatk4/combinegvcfs/test.yml

- name: gatk4 combinegvcfs test_gatk4_combinegvcfs
  command: nextflow run tests/modules/gatk4/combinegvcfs -entry test_gatk4_combinegvcfs -c tests/config/nextflow.config
  tags:
    - gatk4
    - gatk4/combinegvcfs
  files:
    - path: output/gatk4/test.combined.g.vcf.gz
      contains: ["VCFv4.2"]
    - path: output/gatk4/versions.yml
      md5sum: 49d9c467f84b6a99a4da3ef161af26bd
Gatk4 combinegvcfs (#1342) * add gatk4/combinegvcfs module * update gatk4/combinegvcfs * loop to create a string adding -V to each vcf file * add contains for variable md5 * rm whitespace * meta in output * fix indentations * fix indentations * move tmpdir to args and update conda version Co-authored-by: Peri <rrx8@cdc.gov> Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com> 2022-02-23 15:29:29 +00:00			`- name: gatk4 combinegvcfs test_gatk4_combinegvcfs`
			`command: nextflow run tests/modules/gatk4/combinegvcfs -entry test_gatk4_combinegvcfs -c tests/config/nextflow.config`
			`tags:`
			`- gatk4`
			`- gatk4/combinegvcfs`
			`files:`
			`- path: output/gatk4/test.combined.g.vcf.gz`
Prettier (#1405) * style: Add prettier config files * build: Add prettier vscode extension * ci: Replace markdownlint and yamllint with prettier * style: Run prettier * style: Use indent of 2 for markdown as well https://github.com/nf-core/tools/pull/1470#issuecomment-1071028358 * style: Fix indent * style: Let editorconfig take over tab widths * style: yaml => yml * ci: Run prettier once Co-authored-by: Phil Ewels <phil.ewels@scilifelab.se> Co-authored-by: Phil Ewels <phil.ewels@scilifelab.se> 2022-03-18 13:27:50 +00:00			`contains: ["VCFv4.2"]`
Gatk4 combinegvcfs (#1342) * add gatk4/combinegvcfs module * update gatk4/combinegvcfs * loop to create a string adding -V to each vcf file * add contains for variable md5 * rm whitespace * meta in output * fix indentations * fix indentations * move tmpdir to args and update conda version Co-authored-by: Peri <rrx8@cdc.gov> Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com> 2022-02-23 15:29:29 +00:00			`- path: output/gatk4/versions.yml`
			`md5sum: 49d9c467f84b6a99a4da3ef161af26bd`