2021-02-12 12:24:10 +00:00
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name: bwamem2_index
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2021-02-12 12:00:02 +00:00
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description: Create BWA-mem2 index for reference genome
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keywords:
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2022-02-15 11:15:27 +00:00
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- index
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- fasta
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- genome
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- reference
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2021-02-12 12:00:02 +00:00
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tools:
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2022-02-15 11:15:27 +00:00
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- bwa:
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description: |
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BWA-mem2 is a software package for mapping DNA sequences against
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a large reference genome, such as the human genome.
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homepage: https://github.com/bwa-mem2/bwa-mem2
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documentation: https://github.com/bwa-mem2/bwa-mem2#usage
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licence: ["MIT"]
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2021-02-12 12:00:02 +00:00
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input:
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2022-07-26 20:48:47 +00:00
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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2022-02-15 11:15:27 +00:00
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- fasta:
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type: file
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description: Input genome fasta file
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2021-02-12 12:00:02 +00:00
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output:
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2022-07-26 20:48:47 +00:00
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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2022-02-15 11:15:27 +00:00
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- index:
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type: file
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description: BWA genome index files
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2022-08-24 08:31:05 +00:00
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pattern: "*.{0123,amb,ann,bwt.2bit.64,pac}"
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2022-02-15 11:15:27 +00:00
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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2021-02-12 12:00:02 +00:00
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authors:
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2022-02-15 11:15:27 +00:00
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- "@maxulysse"
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