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17 lines
571 B
Text
17 lines
571 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { SNIPPY_RUN } from '../../../../modules/snippy/run/main.nf'
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workflow test_snippy_run {
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input = [ [ id:'test', single_end:false ], // meta map
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[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true),
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file(params.test_data['sarscov2']['illumina']['test_2_fastq_gz'], checkIfExists: true) ]
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]
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reference = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
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SNIPPY_RUN ( input, reference )
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}
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