mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-15 14:13:09 +00:00
44 lines
1.1 KiB
YAML
44 lines
1.1 KiB
YAML
|
name: "bamtools_stats"
|
||
|
|
description: BamTools provides both a programmer's API and an end-user's toolkit for handling BAM files.
|
||
|
|
keywords:
|
||
|
|
- bamtools
|
||
|
|
- stats
|
||
|
|
- bam
|
||
|
|
tools:
|
||
|
|
- bamtools:
|
||
|
|
description: C++ API & command-line toolkit for working with BAM data
|
||
|
|
homepage: http://github.com/pezmaster31/bamtools
|
||
|
|
documentation: https://github.com/pezmaster31/bamtools/wiki
|
||
|
|
tool_dev_url: http://github.com/pezmaster31/bamtools
|
||
|
|
doi: ""
|
||
|
|
licence: ["MIT"]
|
||
|
|
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- bam:
|
||
|
|
type: file
|
||
|
|
description: BAM file
|
||
|
|
pattern: "*.bam"
|
||
|
|
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
- stats:
|
||
|
|
type: file
|
||
|
|
description: File containing alignment statistics
|
||
|
|
pattern: "*.stats"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@lescai"
|