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47 lines
1.2 KiB
YAML
47 lines
1.2 KiB
YAML
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name: gfaffix
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description: Collapse walk-preserving shared affixes in variation graphs in GFA format
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keywords:
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- gfa
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- graph
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- pangenome
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- variation graph
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tools:
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- gfaffix:
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description: |
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GFAffix identifies walk-preserving shared affixes in variation graphs and
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collapses them into a non-redundant graph structure.
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homepage: https://github.com/marschall-lab/GFAffix
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documentation: https://github.com/marschall-lab/GFAffix
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licence: ["MIT"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- gfa:
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type: file
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description: Variation graph in GFA format
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pattern: "*.{gfa}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- gfa:
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type: file
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description: Non-redundant variation graph in GFA 1.0 format
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pattern: "*.{gfa}"
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- affixes:
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type: file
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description: Shared affixes in tab-separated values (TSV) text format
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pattern: "*.{txt}"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@heuermh"
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