mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-15 14:13:09 +00:00
53 lines
1.4 KiB
YAML
53 lines
1.4 KiB
YAML
|
name: "pasty"
|
||
|
|
description: Serogroup Pseudomonas aeruginosa assemblies
|
||
|
|
keywords:
|
||
|
|
- bacteria
|
||
|
|
- serogroup
|
||
|
|
- fasta
|
||
|
|
- assembly
|
||
|
|
tools:
|
||
|
|
- "pasty":
|
||
|
|
description: "A tool for in silico serogrouping of Pseudomonas aeruginosa isolates"
|
||
|
|
homepage: "https://github.com/rpetit3/pasty"
|
||
|
|
documentation: "https://github.com/rpetit3/pasty"
|
||
|
|
tool_dev_url: "https://github.com/rpetit3/pasty"
|
||
|
|
doi: ""
|
||
|
|
licence: "['Apache-2.0']"
|
||
|
|
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- fasta:
|
||
|
|
type: file
|
||
|
|
description: An assembly in FASTA format
|
||
|
|
pattern: "*.{fasta,fasta.gz,fna,fna.gz,fa,fa.gz}"
|
||
|
|
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
- tsv:
|
||
|
|
type: file
|
||
|
|
description: A tab-delimited file with the predicted serogroup
|
||
|
|
pattern: "*.tsv"
|
||
|
|
- blast:
|
||
|
|
type: file
|
||
|
|
description: A tab-delimited file of all blast hits
|
||
|
|
pattern: "*.blastn.tsv"
|
||
|
|
- details:
|
||
|
|
type: file
|
||
|
|
description: A tab-delimited file with details for each serogroup
|
||
|
|
pattern: "*.details.tsv"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@rpetit3"
|