nf-core_modules/tests/modules/atlas/pmd/main.nf

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#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { ATLAS_PMD } from '../../../../modules/atlas/pmd/main.nf'
workflow test_atlas_pmd {
input = [
[ id:'test', single_end:false ], // meta map
file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true),
file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_bam_bai'], checkIfExists: true),
[]
]
fasta = file(params.test_data['homo_sapiens']['genome']['genome_fasta'], checkIfExists: true)
fai = file(params.test_data['homo_sapiens']['genome']['genome_fasta_fai'], checkIfExists: true)
ATLAS_PMD ( input, fasta, fai )
}