2021-02-08 22:41:10 +00:00
|
|
|
#!/usr/bin/env nextflow
|
|
|
|
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
|
|
|
|
include { BEDTOOLS_MASKFASTA } from '../../../../software/bedtools/maskfasta/main.nf' addParams( options: [:] )
|
|
|
|
|
|
|
|
workflow test_bedtools_maskfasta {
|
2021-03-24 09:53:41 +00:00
|
|
|
bed = [ [ id:'test'],
|
|
|
|
file("${launchDir}/tests/data/genomics/sarscov2/genome/bed/test.bed", checkIfExists: true)
|
|
|
|
]
|
|
|
|
fasta = [ file("${launchDir}/tests/data/genomics/sarscov2/genome/genome.fasta", checkIfExists: true) ]
|
2021-02-08 22:41:10 +00:00
|
|
|
|
2021-03-24 09:53:41 +00:00
|
|
|
BEDTOOLS_MASKFASTA ( bed, fasta )
|
2021-02-08 22:41:10 +00:00
|
|
|
}
|