nf-core_modules/tests/modules/samtools/mpileup/test.yml

- name: samtools mpileup test_samtools_mpileup
  command: nextflow run tests/modules/samtools/mpileup -entry test_samtools_mpileup -c tests/config/nextflow.config
  tags:
    - samtools
    - samtools/mpileup
  files:
    - path: output/samtools/test.mpileup.gz
      md5sum: 29455c36377196e8bc9cf831cf17b5dc
    - path: output/samtools/versions.yml

- name: samtools mpileup test_samtools_mpileup_intervals
  command: nextflow run tests/modules/samtools/mpileup -entry test_samtools_mpileup_intervals -c tests/config/nextflow.config
  tags:
    - samtools
    - samtools/mpileup
  files:
    - path: output/samtools/test.mpileup.gz
      md5sum: d0538ec23b294245748ced92484b9a8d
    - path: output/samtools/versions.yml
Mpileup also likes intervals (#1445) * Mpileup also likes intervals * Also update meta yml with inclusive input and intervals Co-authored-by: Sateesh Peri <33637490+sateeshperi@users.noreply.github.com> Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com> 2022-03-25 06:46:51 +00:00			`- name: samtools mpileup test_samtools_mpileup`
			`command: nextflow run tests/modules/samtools/mpileup -entry test_samtools_mpileup -c tests/config/nextflow.config`
Restructure tests to run individually for each module 2021-02-03 16:02:58 +00:00			`tags:`
			`- samtools`
Lint modules ci (#389) * ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-04-08 08:10:52 +00:00			`- samtools/mpileup`
Restructure tests to run individually for each module 2021-02-03 16:02:58 +00:00			`files:`
samtools mpileup now bgzips mpileup files 2022-06-11 11:32:53 +00:00			`- path: output/samtools/test.mpileup.gz`
			`md5sum: 29455c36377196e8bc9cf831cf17b5dc`
Mpileup also likes intervals (#1445) * Mpileup also likes intervals * Also update meta yml with inclusive input and intervals Co-authored-by: Sateesh Peri <33637490+sateeshperi@users.noreply.github.com> Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com> 2022-03-25 06:46:51 +00:00			`- path: output/samtools/versions.yml`

			`- name: samtools mpileup test_samtools_mpileup_intervals`
			`command: nextflow run tests/modules/samtools/mpileup -entry test_samtools_mpileup_intervals -c tests/config/nextflow.config`
			`tags:`
			`- samtools`
			`- samtools/mpileup`
			`files:`
samtools mpileup now bgzips mpileup files 2022-06-11 11:32:53 +00:00			`- path: output/samtools/test.mpileup.gz`
Mpileup intervals (#1955) * update tests * update * update * make the manta inputs consistant for germline/somatic/tumoronly * match chromosomes to cram file (chr21) * undo genotypegvfs * undo genotypegvfs * include intervals * update md5 with interval Co-authored-by: Smith Nicholas <smith@in.tum.de> 2022-08-16 12:16:35 +00:00			`md5sum: d0538ec23b294245748ced92484b9a8d`
Mpileup also likes intervals (#1445) * Mpileup also likes intervals * Also update meta yml with inclusive input and intervals Co-authored-by: Sateesh Peri <33637490+sateeshperi@users.noreply.github.com> Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com> 2022-03-25 06:46:51 +00:00			`- path: output/samtools/versions.yml`