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16 lines
616 B
Text
16 lines
616 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { ATLAS_SPLITMERGE } from '../../../../modules/atlas/splitmerge/main.nf'
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//MAIN
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workflow test_atlas_splitmerge {
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meta = [ id:'test', single_end:false ]
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bam = file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true)
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bai = file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_bam_bai'], checkIfExists: true)
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settings = file(params.test_data['homo_sapiens']['illumina']['read_group_settings_txt'], checkIfExists: true)
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ATLAS_SPLITMERGE ( [meta, bam, bai, settings, []] )
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}
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