nf-core_modules/tests/software/fastqc/test.yml

- name: Run fastqc single-end test workflow
  command: nextflow run ./tests/software/fastqc/ -profile docker -entry test_single_end -c tests/config/nextflow.config
  tags:
    - fastqc
  files:
    - path: output/test_single_end/test_fastqc.html
      md5sum: 7027e72c3e55292c1567f12e02565e3b
    - path: output/test_single_end/test_fastqc.zip

- name: Run fastqc paired-end test workflow
  command: nextflow run ./tests/software/fastqc/ -profile docker -entry test_paired_end -c tests/config/nextflow.config
  tags:
    - fastqc
  files:
    - path: output/test_paired_end/test_1_fastqc.html
      md5sum: b3796b4323dc34970b7461f813135254
    - path: output/test_paired_end/test_2_fastqc.html
      md5sum: 55182467f48ca5ed88a2608ea57a1afc
    - path: output/test_paired_end/test_1_fastqc.zip
    - path: output/test_paired_end/test_2_fastqc.zip
test(fastqc): Use -entry to speed up tests `--wt, --workflow-threads` is now an option and can be used to run tests simultaneously. 2020-11-16 19:41:59 +00:00			`- name: Run fastqc single-end test workflow`
test(fastqc): restructure under software/fastqc Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2020-11-24 21:30:51 +00:00			`command: nextflow run ./tests/software/fastqc/ -profile docker -entry test_single_end -c tests/config/nextflow.config`
test(fastqc): Add initial pytest-workflow 2020-11-16 15:35:01 +00:00			`tags:`
			`- fastqc`
test(fastqc): Add expected files and md5sums The md5 sums change for the zip files every run so it's difficult to hit a moving target. 2020-11-16 16:20:29 +00:00			`files:`
			`- path: output/test_single_end/test_fastqc.html`
test(fastqc): Fix md5sums 2020-11-24 19:36:50 +00:00			`md5sum: 7027e72c3e55292c1567f12e02565e3b`
test(fastqc): Add expected files and md5sums The md5 sums change for the zip files every run so it's difficult to hit a moving target. 2020-11-16 16:20:29 +00:00			`- path: output/test_single_end/test_fastqc.zip`
test(fastqc): Use -entry to speed up tests `--wt, --workflow-threads` is now an option and can be used to run tests simultaneously. 2020-11-16 19:41:59 +00:00
			`- name: Run fastqc paired-end test workflow`
test(fastqc): restructure under software/fastqc Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2020-11-24 21:30:51 +00:00			`command: nextflow run ./tests/software/fastqc/ -profile docker -entry test_paired_end -c tests/config/nextflow.config`
test(fastqc): Use -entry to speed up tests `--wt, --workflow-threads` is now an option and can be used to run tests simultaneously. 2020-11-16 19:41:59 +00:00			`tags:`
			`- fastqc`
			`files:`
test(fastqc): Add expected files and md5sums The md5 sums change for the zip files every run so it's difficult to hit a moving target. 2020-11-16 16:20:29 +00:00			`- path: output/test_paired_end/test_1_fastqc.html`
test(fastqc): Fix md5sums 2020-11-24 19:36:50 +00:00			`md5sum: b3796b4323dc34970b7461f813135254`
test(fastqc): Add expected files and md5sums The md5 sums change for the zip files every run so it's difficult to hit a moving target. 2020-11-16 16:20:29 +00:00			`- path: output/test_paired_end/test_2_fastqc.html`
test(fastqc): Fix md5sums 2020-11-24 19:36:50 +00:00			`md5sum: 55182467f48ca5ed88a2608ea57a1afc`
test(fastqc): Add expected files and md5sums The md5 sums change for the zip files every run so it's difficult to hit a moving target. 2020-11-16 16:20:29 +00:00			`- path: output/test_paired_end/test_1_fastqc.zip`
			`- path: output/test_paired_end/test_2_fastqc.zip`