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44 lines
1.5 KiB
YAML
44 lines
1.5 KiB
YAML
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name: "gatk4_composestrtablefile"
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description: This tool looks for low-complexity STR sequences along the reference that are later used to estimate the Dragstr model during single sample auto calibration CalibrateDragstrModel.
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keywords:
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- gatk4
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- composestrtablefile
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tools:
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- gatk4:
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description:
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Genome Analysis Toolkit (GATK4). Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools
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with a primary focus on variant discovery and genotyping. Its powerful processing engine
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and high-performance computing features make it capable of taking on projects of any size.
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homepage: https://gatk.broadinstitute.org/hc/en-us
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documentation: https://gatk.broadinstitute.org/hc/en-us/articles/4405451249819-ComposeSTRTableFile
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tool_dev_url: https://github.com/broadinstitute/gatk
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doi: 10.1158/1538-7445.AM2017-3590
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licence: ["Apache-2.0"]
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input:
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- fasta:
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type: file
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description: FASTA reference file
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pattern: "*.{fasta,fa}"
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- fasta_fai:
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type: file
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description: index of the FASTA reference file
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pattern: "*.fai"
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- dict:
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type: file
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description: Sequence dictionary of the FASTA reference file
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pattern: "*.dict"
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output:
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- str_table:
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type: file
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description: A zipped folder containing the STR table files
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pattern: "*.zip"
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authors:
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- "@nvnieuwk"
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